SNP Profiles matching ICS 43

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	CT	AA	CT
1._ICS_43	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	CT	AA	CT
2._RUQ_144	_	AG	GG	CT	_	_	_	GT	_	_	_	CT	AA	_
3._CC_10	_	_	GG	CT	TT	AA	_	GT	CT	CT	AA	CT	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC	AG
1._ICS_43	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC	AG
2._RUQ_144	_	_	_	CC	GG	GT	_	TT	AA	CC	TT	TT	CC	AG
3._CC_10	AA	GG	TT	CC	GG	GT	AG	CT	_	CC	TT	CT	CC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AA	CT	GG	CG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._ICS_43	AG	AA	CT	GG	_	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._RUQ_144	_	AA	CT	GG	CG	AC	CT	GT	AC	_	_	X_X	X_X	X_X
3._CC_10	GG	_	CT	AG	_	AC	_	GT	CC	TT	GG	X_X	X_X	X_X

Input profile: ICS_43 RUQ_144

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_43

identical
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._CC_10

90.6 %
32 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25